Microsoft has updated the following KB article which contains a Hotfix:

Per-computer variables for imported computers are not read in System Center 2012 R2 Configuration ManagerSummary:

Per-computer task sequence variables that are defined for imported computers are filtered out of client policies. This prevents the variables from being read during task sequence execution. This problem does not affect per-computer variables that are defined for existing clients.

http://support.microsoft.com/kb/2907591

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