Microsoft has just updated KB 2309968:

Slow performance after you change the system time or after you resume the computer from hibernation on a System Center Configuration Manager 2007 SP2 client

Symptoms

Consider the following scenario:

  • You deploy many updates to a Microsoft System Center Configuration Manager 2007 Service Pack 2 (SP2) client.
  • You perform an operation that generates the WM_TIMECHANGE message from the client computer. For example, you perform one of the following operations:
    • You change the system time.
    • You resume a computer from sleep.
    • You resume a computer from hibernation.

In this scenario, the computer runs slowly for some time. Additionally, the CPU usage is high, and the computer processes a heavy workload of disk I/O.

Full details:

http://support.microsoft.com/kb/2309968

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